About


Namdinator was developed by Rune Kidmose & Jesper Lykkegaard Karlsen and Namdinators web service was created by Jonathan Juhl, Jonathan Søholm-Boesen & Jesper Lykkegaard Karlsen.


Namdinator is described in this paper:

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Namdinator - Automatic Molecular Dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps

Rune Thomas Kidmose, Jonathan Juhl, Poul Nissen, Thomas Boesen, Jesper Lykkegaard Karlsen, Bjørn Panyella Pedersen

bioRxiv 501197; doi: https://doi.org/10.1101/501197



Please cite the above when using Namdinator and also the original MDFF paper:



Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography.

Trabuco LG, Villa E, Schreiner E, Harrison CB, Schulten K.

Methods, 49(2):174-80. (2009) doi: 10.1016/j.ymeth.2009.04.005.